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1

A survey of Knowledge Discovery and Data Mining process models

KURGAN, LUKASZ A., MUSILEK, PETR

Journal:

The Knowledge Engineering Review

Year:

2006

Language:

english

File:

PDF, 211 KB

english, 2006

2

Prediction of protein folding rates from primary sequences using hybrid sequence representation

Yingfu Jiang, Paul Iglinski, Lukasz Kurgan

Journal:

Journal of Computational Chemistry

Year:

2009

Language:

english

File:

PDF, 123 KB

english, 2009

3

Endoplasmic reticulum and the microRNA environment in the cardiovascular system

Groenendyk, Jody, Fan, Xiao, Peng, Zhenling, Kurgan, Lukasz, Michalak, Marek

Journal:

Canadian Journal of Physiology and Pharmacology

Year:

2019

Language:

english

File:

PDF, 1.69 MB

english, 2019

4

Genetic learning of fuzzy cognitive maps

Wojciech Stach, Lukasz Kurgan, Witold Pedrycz, Marek Reformat

Journal:

Fuzzy Sets and Systems

Year:

2005

Language:

english

File:

PDF, 1.30 MB

english, 2005

5

A divide and conquer method for learning large Fuzzy Cognitive Maps

Wojciech Stach, Lukasz Kurgan, Witold Pedrycz

Journal:

Fuzzy Sets and Systems

Year:

2010

Language:

english

File:

PDF, 829 KB

english, 2010

6

CLIP4: Hybrid inductive machine learning algorithm that generates inequality rules

Krzysztof J. Cios, Lukasz A. Kurgan

Journal:

Information Sciences

Year:

2004

Language:

english

File:

PDF, 661 KB

english, 2004

7

Identification of tubulin drug binding sites and prediction of relative differences in binding affinities to tubulin isotypes using digital signal processing

Ke Chen, J. Torin Huzil, Holly Freedman, Parameswaran Ramachandran, Andreas Antoniou, Jack A. Tuszynski, Lukasz Kurgan

Journal:

Journal of Molecular Graphics and Modelling

Year:

2008

Language:

english

File:

PDF, 1.29 MB

english, 2008

8

Impact of imputation of missing values on classification error for discrete data

Alireza Farhangfar, Lukasz Kurgan, Jennifer Dy

Journal:

Pattern Recognition

Year:

2008

Language:

english

File:

PDF, 903 KB

english, 2008

9

CRYSTALP2: sequence-based protein crystallization propensity prediction

Lukasz Kurgan, Ali A Razib, Sara Aghakhani, Scott Dick, Marcin Mizianty, Samad Jahandideh

Journal:

BMC Structural Biology

Year:

2009

Language:

english

File:

PDF, 2.10 MB

english, 2009

10

A Critical Comparative Assessment of Predictions of Protein-Binding Sites for Biologically Relevant Organic Compounds

Ke Chen, Marcin J. Mizianty, Jianzhao Gao, Lukasz Kurgan

Journal:

Year:

2011

Language:

english

File:

PDF, 842 KB

english, 2011

11

Knowledge discovery approach to automated cardiac SPECT diagnosis

Lukasz A. Kurgan, Krzysztof J. Cios, Ryszard Tadeusiewicz, Marek Ogiela, Lucy S. Goodenday

Journal:

Artificial Intelligence in Medicine

Year:

2001

Language:

english

File:

PDF, 367 KB

english, 2001

12

Disordered Proteinaceous Machines

Fuxreiter, Monika, Tóth-Petróczy, Ágnes, Kraut, Daniel A., Matouschek, Andreas T., Lim, Roderick Y. H., Xue, Bin, Kurgan, Lukasz, Uversky, Vladimir N.

Journal:

Chemical Reviews

Year:

2014

Language:

english

File:

PDF, 14.07 MB

english, 2014

13

Structural Disorder in Viral Proteins

Xue, Bin, Blocquel, David, Habchi, Johnny, Uversky, Alexey V., Kurgan, Lukasz, Uversky, Vladimir N., Longhi, Sonia

Journal:

Chemical Reviews

Year:

2014

Language:

english

File:

PDF, 7.46 MB

english, 2014

14

Exceptionally abundant exceptions: comprehensive characterization of intrinsic disorder in all domains of life

Peng, Zhenling, Yan, Jing, Fan, Xiao, Mizianty, Marcin J., Xue, Bin, Wang, Kui, Hu, Gang, Uversky, Vladimir N., Kurgan, Lukasz

Journal:

Cellular and Molecular Life Sciences

Year:

2015

Language:

english

File:

PDF, 4.75 MB

english, 2015

15

The Roles of β-Tubulin Mutations and Isotype Expression in Acquired Drug Resistance

Huzil, J. Torin, Chen, Ke, Kurgan, Lukasz, Tuszynski, Jack A.

Journal:

Cancer Informatics

Year:

2007

Language:

english

File:

PDF, 979 KB

english, 2007

16

DeepFunc: A Deep Learning Framework for Accurate Prediction of Protein Functions from Protein Sequences and Interactions

Zhang, Fuhao, Song, Hong, Zeng, Min, Li, Yaohang, Kurgan, Lukasz, Li, Min

Journal:

Year:

2019

Language:

english

File:

PDF, 1.21 MB

english, 2019

17

Accuracy of protein-level disorder predictions

Katuwawala, Akila, Oldfield, Christopher J, Kurgan, Lukasz

Journal:

Briefings in Bioinformatics

Year:

2019

Language:

english

File:

PDF, 161.90 MB

english, 2019

18

Systematic evaluation of machine learning methods for identifying humanâpathogen proteinâprotein interactions

Chen, Huaming, Li, Fuyi, Wang, Lei, Jin, Yaochu, Chi, Chi-Hung, Kurgan, Lukasz, Song, Jiangning, Shen, Jun

Journal:

Briefings in Bioinformatics

Year:

2020

File:

PDF, 7.42 MB

2020

19

Prediction of protein structural class using novel evolutionary collocation-based sequence representation

Ke Chen, Lukasz A. Kurgan, Jishou Ruan

Journal:

Journal of Computational Chemistry

Year:

2008

Language:

english

File:

PDF, 178 KB

english, 2008

20

Prediction of integral membrane protein type by collocated hydrophobic amino acid pairs

Ke Chen, Yingfu Jiang, Li Du, Lukasz Kurgan

Journal:

Journal of Computational Chemistry

Year:

2009

Language:

english

File:

PDF, 264 KB

english, 2009

21

SPINE X: Improving protein secondary structure prediction by multistep learning coupled with prediction of solvent accessible surface area and backbone torsion angles

Eshel Faraggi, Tuo Zhang, Yuedong Yang, Lukasz Kurgan, Yaoqi Zhou

Journal:

Journal of Computational Chemistry

Year:

2012

Language:

english

File:

PDF, 154 KB

english, 2012

22

A comment on “Prediction of protein structural classes by a new measure of information discrepancy”

Kanaka Durga Kedarisetti, Lukasz Kurgan, Scott Dick

Journal:

Computational Biology and Chemistry

Year:

2006

Language:

english

File:

PDF, 88 KB

english, 2006

23

A tree-projection-based algorithm for multi-label recurrent-item associative-classification rule generation

Rafal Rak, Lukasz Kurgan, Marek Reformat

Journal:

Data & Knowledge Engineering

Year:

2008

Language:

english

File:

PDF, 866 KB

english, 2008

24

Novel scales based on hydrophobicity indices for secondary protein structure

Lukasz A. Kurgan, Wojciech Stach, Jishou Ruan

Journal:

Journal of Theoretical Biology

Year:

2007

Language:

english

File:

PDF, 480 KB

english, 2007

25

In-silico prediction of disorder content using hybrid sequence representation

Marcin J Mizianty, Tuo Zhang, Bin Xue, Yaoqi Zhou, A Keith Dunker, Vladimir N Uversky, Lukasz Kurgan

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 522 KB

english, 2011

26

Prediction of flexible/rigid regions from protein sequences using k-spaced amino acid pairs

Ke Chen, Lukasz A Kurgan, Jishou Ruan

Journal:

BMC Structural Biology

Year:

2007

Language:

english

File:

PDF, 1.38 MB

english, 2007

27

ATPsite: sequence-based prediction of ATP-binding residues

Ke Chen, Marcin J Mizianty, Lukasz Kurgan

Journal:

Proteome Science

Year:

2011

Language:

english

File:

PDF, 424 KB

english, 2011

28

Prediction of protein secondary structure content for the twilight zone sequences

Leila Homaeian, Lukasz A. Kurgan, Jishou Ruan, Krzysztof J. Cios, Ke Chen

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 305 KB

english, 2007

29

On the relation between residue flexibility and local solvent accessibility in proteins

Hua Zhang, Tuo Zhang, Ke Chen, Shiyi Shen, Jishou Ruan, Lukasz Kurgan

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2009

Language:

english

File:

PDF, 780 KB

english, 2009

30

Accurate prediction of protein folding rates from sequence and sequence-derived residue flexibility and solvent accessibility

Jianzhao Gao, Tuo Zhang, Hua Zhang, Shiyi Shen, Jishou Ruan, Lukasz Kurgan

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2010

Language:

english

File:

PDF, 650 KB

english, 2010

31

Improved identification of outer membrane beta barrel proteins using primary sequence, predicted secondary structure, and evolutionary information

Marcin J. Mizianty, Lukasz Kurgan

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 243 KB

english, 2011

32

Secondary structure-based assignment of the protein structural classes

Lukasz A. Kurgan, Tuo Zhang, Hua Zhang, Shiyi Shen, Jishou Ruan

Journal:

Year:

2008

Language:

english

File:

PDF, 559 KB

english, 2008

33

iFC2: an integrated web-server for improved prediction of protein structural class, fold type, and secondary structure content

Ke Chen, Wojciech Stach, Leila Homaeian, Lukasz Kurgan

Journal:

Year:

2011

Language:

english

File:

PDF, 306 KB

english, 2011

34

Determination of protein folding kinetic types using sequence and predicted secondary structure and solvent accessibility

Hua Zhang, Tuo Zhang, Jianzhao Gao, Jishou Ruan, Shiyi Shen, Lukasz Kurgan

Journal:

Year:

2012

Language:

english

File:

PDF, 492 KB

english, 2012

35

Prediction of Three Dimensional Structure of Calmodulin

Ke Chen, Jishou Ruan, Lukasz A. Kurgan

Journal:

The Protein Journal

Year:

2006

Language:

english

File:

PDF, 613 KB

english, 2006

36

Quantitative Analysis of the Conservation of the Tertiary Structure of Protein Segments

Jishou Ruan, Ke Chen, Jack A. Tuszynski, Lukasz A. Kurgan

Journal:

The Protein Journal

Year:

2006

Language:

english

File:

PDF, 598 KB

english, 2006

37

Sequence Representation and Prediction of Protein Secondary Structure for Structural Motifs in Twilight Zone Proteins

Lukasz Kurgan, Kanaka Durga Kedarisetti

Journal:

The Protein Journal

Year:

2006

Language:

english

File:

PDF, 240 KB

english, 2006

38

On the Relation Between the Predicted Secondary Structure and the Protein Size

Journal:

The Protein Journal

Year:

2008

Language:

english

File:

PDF, 183 KB

english, 2008

39

Discovery of factors influencing patent value based on machine learning in patents in the field of nanotechnology

Scott D. Bass, Lukasz A. Kurgan

Journal:

Year:

2010

Language:

english

File:

PDF, 357 KB

english, 2010

40

Prediction of structural classes for protein sequences and domains—Impact of prediction algorithms, sequence representation and homology, and test procedures on accuracy

Lukasz A. Kurgan, Leila Homaeian

Journal:

Pattern Recognition

Year:

2006

Language:

english

File:

PDF, 331 KB

english, 2006

41

Protein intrinsic disorder as a flexible armor and a weapon of HIV-1

Bin Xue, Marcin J. Mizianty, Lukasz Kurgan, Vladimir N. Uversky

Journal:

Cellular and Molecular Life Sciences

Year:

2012

Language:

english

File:

PDF, 2.53 MB

english, 2012

42

Highly accurate and consistent method for prediction of helix and strand content from primary protein sequences

Jishou Ruan, Kui Wang, Jie Yang, Lukasz A. Kurgan, Krzysztof Cios

Journal:

Artificial Intelligence in Medicine

Year:

2005

Language:

english

File:

PDF, 653 KB

english, 2005

43

Modular prediction of protein structural classes from sequences of twilight-zone identity with predicting sequences

Marcin J Mizianty, Lukasz Kurgan

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 1.29 MB

english, 2009

44

SCPRED: Accurate prediction of protein structural class for sequences of twilight-zone similarity with predicting sequences

Lukasz Kurgan, Krzysztof Cios, Ke Chen

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 392 KB

english, 2008

45

Sequence based residue depth prediction using evolutionary information and predicted secondary structure

Hua Zhang, Tuo Zhang, Ke Chen, Shiyi Shen, Jishou Ruan, Lukasz Kurgan

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 850 KB

english, 2008

46

Prediction of beta-turns at over 80% accuracy based on an ensemble of predicted secondary structures and multiple alignments

Ce Zheng, Lukasz Kurgan

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 365 KB

english, 2008

47

Improved machine learning method for analysis of gas phase chemistry of peptides

Allison Gehrke, Shaojun Sun, Lukasz Kurgan, Natalie Ahn, Katheryn Resing, Karen Kafadar, Krzysztof Cios

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 496 KB

english, 2008

48

Classifier ensembles for protein structural class prediction with varying homology

Kanaka Durga Kedarisetti, Lukasz Kurgan, Scott Dick

Journal:

Biochemical and Biophysical Research Communications

Year:

2006

Language:

english

File:

PDF, 509 KB

english, 2006

49

Prediction of protein crystallization using collocation of amino acid pairs

Ke Chen, Lukasz Kurgan, Mandana Rahbari

Journal:

Biochemical and Biophysical Research Communications

Year:

2007

Language:

english

File:

PDF, 225 KB

english, 2007

50

Prediction of protein structural class for the twilight zone sequences

Lukasz Kurgan, Ke Chen

Journal:

Biochemical and Biophysical Research Communications

Year:

2007

Language:

english

File:

PDF, 165 KB

english, 2007

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